Melanocortin-4 receptors (MC4R) are involved in the regulation of food intake, sympathetic nervous activity, and adrenal and thyroid function by leptin. The role of MC4R in regulating energy balance by leptin was investigated using double heterozygote or homozygous leptin (Lep^ob) and Mc4r gene mutant mice. Double heterozygous or homozygous mutants were generated by crossing MC4R knockout (Mc4r-) mice, backcrossed onto C57BL/6J (B6), with B6.V-Lep^ob mice. Energy expenditure was measured using indirect calorimetry. The effect of leptin on food intake, weight loss, insulin and corticosterone was compared for Lep^ob/Lep^obMc4r- mice and Lep^ob/Lep^ob mice. Double heterozygous and homozygous mutants exhibited an additive effect on fat mass. The 2-fold increase in body weight associated with severe obesity of Lep^ob/Lep^ob mice was associated with a significantly higher 24 h total and resting energy expenditure. The effect of obesity on energy expenditure was attenuated by 50% in Lep^ob/Lep^ob Mc4r+/- and Lep^ob/Lep^ob Mc4r- mice. Loss of MC4R did not affect basal food intake of Lep^ob/Lep^ob mice, but was associated with partial leptin resistance in terms of food intake and weight loss. Leptin suppression of insulin and corticosterone in Lep^ob/Lep^ob mice were not significantly affected by Mc4r genotype. These results suggest a complex interaction between the Lep and Mc4r genes in energy homeostasis, and suggest MC4R retain significant anti-obesity function in the obese leptin-deficient state. Increased adiposity with double mutations may involve a reduction in energy expenditure. MC4R might have a modest role in the regulation of energy balance by exogenously administered leptin, primarily effecting food intake.