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Oncology and Molecular Endocrinology Research Center, CHUL Research Center, and Laval University, Quebéc, Canada G1V 4G2
Address all correspondence and requests for reprints to: Dr. Claude Labrie, Oncology and Molecular Endocrinology Research Center, CHUL Research Center, 2705 Laurier Boulevard, Québec, Canada G1V 4G2. E-mail: claude.labrie{at}crchul.ulaval.ca.
| Abstract |
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| Introduction |
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Approximately 60 different Rho GEFs have been identified in humans to date (3). The prototype of Rho GEFs is the dbl oncogene product, which was originally isolated from a diffuse B cell lymphoma. The region of the Dbl protein that is responsible for its catalytic activity is referred to as the Dbl homology (DH) domain (4), a domain that is conserved in all Rho GEFs. Most Rho GEFs also contain a pleckstrin homology (PH) domain that is located immediately C terminal to the DH domain (3). The PH domain is involved in targeting Rho GEFs to specific subcellular sites, such as the plasma membrane. Interestingly, the Dbl oncogene product and a majority of other Rho GEFs function as oncogenes in transfection assays, and the DH-PH module is responsible for the oncogenic property of Rho GEFs. Rho GEFs also contain other functional domains, such as Src homology domains, which are likely to dictate the specific interactions and functions of individual Rho GEFs.
Rho GTPases are activated by intracellular signals that are triggered by the stimulation of several growth factor receptors, cytokine receptors, adhesion receptors, or serpentine receptors. One of the possible mechanisms by which such signals can lead to Rho GTPase activation is likely to involve the activation of Rho GEFs. The current model for Rho GEF activation is that Rho GEFs exist in an inactive or partially activated state in the absence of stimulation. Although the specific mechanism(s) by which Rho GEFs are activated in response to external stimuli has not been completely resolved, it is generally thought that Rho GEF activation results from the relief of inhibitory intra- or intermolecular interactions and alterations in the subcellular localization of Rho GEFs, some of which could be related to changes in the phosphorylation state of Rho GEFs (5).
Whereas Rho GEFs directly activate Rho GTPases by enhancing the formation of GTP-bound Rho GTPases, Rho GTPase activity can also be controlled at other levels. For instance, GTPase-activating proteins inactivate GTP-bound Rho GTPases by increasing the rate of hydrolysis of bound GTP. Another class of proteins, guanine nucleotide dissociation inhibitors, maintain Rho GEFs in an inactive state by inhibiting the exchange of GDP for GTP. Finally, other proteins can inhibit Rho GEFs directly, possibly by targeting them for degradation via the ubiquitin-proteosome pathway. Examples of these regulatory mechanisms are described in greater detail in some recent review articles (2, 3, 5).
Another mechanism that could possibly be implicated in the regulation of Rho GEF and/or Rho GTPase activity could involve changes in the intracellular concentrations of Rho GEFs themselves or of proteins that modulate Rho GEF/Rho GTPase activity. To our knowledge, such a mechanism has not been described to date. In this report we present the identification of a novel putative human Rho GEF that we designated Src homology 3 (SH3) domain-containing guanine nucleotide exchange factor (SGEF). A particularly interesting characteristic of the SGEF gene is that it produces two transcripts, one of which encodes a protein with the structural features typical of other Rho GEFs. The second transcript encodes a much shorter protein that could function as a modulator of Rho GEF activity. Moreover, the two transcripts are differentially expressed in human tissues, and they are differentially regulated by androgen in LNCaP human prostate cancer cells. This is an interesting discovery because SGEF provides a direct link for cross-talk between the androgen receptor and Rho GTPase signaling pathways in prostate cells.
| Materials and Methods |
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-32P]deoxy-CTP using the DECAprime II Random Priming DNA Labeling Kit (Ambion, Inc., Austin, TX). A LNCaP cDNA expression library in pBK-CMV (provided by E. Lévesque and D. Turgeon) was screened using standard procedures as described in the ZAP Express cDNA Synthesis Kit manual (Stratagene, La Jolla, CA). Positive clones were in vivo excised directly into phagemid pBK-CMV (Stratagene), and one of these clones (pBK-CMV-B4524) was subsequently used to generate a 586-bp HindIII/SacI fragment that was radiolabeled and served as probe to isolate full-length CSGEF cDNAs. The AK probe used to isolate SGEF cDNAs was generated by RT-PCR amplification of nucleotides 369719 of AK022884. The PCR product was subcloned into the SmaI site of pBluescript II KS+/-, and the fragment that served as probe for cDNA library screening was excised by digestion with EcoRI and BamHI.
Cell lines and culture conditions
Cell lines were obtained from American Type Culture Collection (Manassas, VA). Routine as well as experimental cell culture conditions were described in detail previously (6). In brief, LNCaP cells used for R1881 dose response (see Fig. 5A
), time course (see Fig. 5B
), and cycloheximide/actinomycin D experiments (see Fig. 5C
) were cultured in RPMI medium supplemented with hormone-depleted 0.25% fetal calf serum for 6 d before initiation of the indicated experiments (see figure legend). Each experiment was performed at least three times with LNCaP cells between passages 30 and 37.
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Transient expression of epitope-tagged SGEF and CSGEF
The full-length SGEF and CSGEF cDNAs were used as templates for PCR amplification of the open reading frames of SGEF and CSGEF. The forward (sense) oligonucleotides contained a BamHI restriction site, a Kozak consensus sequence (5'-GAGGCAGC-3'), and the first 24 coding nucleotides of SGEF or CSGEF. The reverse primer contained an XbaI restriction site and nucleotides corresponding to the reverse complement of the last 24 nucleotides of the SGEF/CSGEF-coding sequence (excluding the stop codon). The PCR products were cloned into the BamHI and XbaI sites of pcDNA3-HA in-frame with sequences encoding a C-terminal hemagglutinin (HA) epitope (Tyr-Pro-Tyr-Asp-Val-Pro-Asp-Tyr-Ala-Ser-Leu). The expressed fusion proteins contain amino acids (aa) 1871 of SGEF or 1139 of CSGEF, followed by Ser-Arg-Gly-Pro (encoded by the XbaI and ApaI sites of the vector) and the HA epitope. The plasmids were sequenced to confirm that the open reading frames correspond exactly to the sequences presented in Figs. 2
and 3
. For practical reasons, the expression plasmids were transfected into LNCaP (pcDNA3-CSGEF-HA) or T-47D (pcDNA3-SGEF-HA) cells. Forty-eight hours after transfection using standard lipofection techniques (7, 8), the cells were washed twice with PBS buffer, lysed at 37 C for 5 min, and sonicated in 200 µl lysis buffer [6 M urea, 20 mM Tris (pH 6.8), 10% (wt/vol) sodium dodecyl sulfate, 1 mM dithiothreitol, 0.7 µg/ml pepstatin, and 1x Complete protease inhibitors (Roche Molecular Biochemicals, Indianapolis, IN)]. Insoluble materials were removed by centrifugation. SGEF-HA and CSGEF-HA were detected by immunoblotting using a commercially available polyclonal antibody and a chemiluminescent detection system.
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Nucleotide sequence accession numbers
The GenBank accession numbers for SGEF and CSGEF are AF415175 and AF415176, respectively.
| Results |
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We used the radiolabeled B45 fragment as a probe to screen a LNCaP cDNA library and obtained five cDNAs that contained the B45 sequence. The B45 fragment was found to reside in the 3'-untranslated region of the cDNA. The longest cDNA (clone 24) was 3050 bp in length and contained a 139-codon open reading frame. However, clone 24 lacked translation termination codons upstream of and in-frame with the putative initiating methionine, which indicated that it might not contain the complete open reading frame. A second screen was therefore performed using a 586-bp SacI-HindIII fragment derived from the 5' end of clone 24 to isolate cDNAs containing longer 5'-untranslated regions. The longest of the 24 cDNAs we isolated in the second screen (clones 15 and 36) overlapped significantly (>1850 bp) with clone 24 and contained 5'-untranslated regions with the required translation termination codons. The sequences of the longest overlapping cDNAs were merged to yield a 3105-bp cDNA that we designated CSGEF for reasons explained below.
We then compared the CSGEF sequence to that of other GenBank cDNAs and found a related cDNA, clone DKFZp434D146 (GenBank accession no. AL117429) that had been isolated from human testis at the German Cancer Research Center. The first 1740 nucleotides of AL117429 are identical to nucleotides 115-1854 of CSGEF, but AL117429 lacks the B45 sequence and the more extensive 5'-untranslated region of CSGEF (Fig. 1
). The identification of another related cDNA (GenBank accession no. AK022884) that was isolated from a teratocarcinoma by the New Energy and Industrial Technology Development Organization human cDNA sequencing project provided more interesting and significant clues to the structure of the gene that encodes CSGEF. Nucleotides 701827 of CSGEF are identical to the last 1758 nucleotides of AK022884, but the first 69 nucleotides of CSGEF diverge entirely from the first 731 nucleotides of AK022884. Although the deduced protein sequence of AK022884 contained recognizable functional domains (see below), the longest open reading frame of AK022884 was undefined. This suggested that AK022884 and CSGEF could correspond to alternative transcripts of a single gene. We therefore used a fragment of the AK022884 cDNA (nucleotides 369719) as a probe to screen the LNCaP cDNA library. This screen yielded a number of cDNAs, the longest of which was 3857 bp in length. This cDNA, which we hereafter refer to as SGEF, included AK022884 as well as an additional 1368 bp of upstream sequences.
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5135 bp). It is probably relevant to note that exon 15 contains a stretch of 27 adenosine nucleotides (Fig. 1
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SGEF encodes a novel GEF
The longest open reading frame of the SGEF cDNA is derived from exons 215, and it is preceded by two in-frame translation termination codons (Fig. 2
). The sequence of the predicted 871-aa polypeptide was analyzed using the ProfileScan Server (http://hits.isb-sib.ch/cgi-bin/PFSCAN) of the ISREC (Swiss Institute for Experimental Cancer Research) to identify functional motifs. The SGEF protein contains two functional domains that are found in almost all GEFs for Rho GTPases. These are a DH domain (aa 446628) adjacent to a PH domain (aa 655782). As is typical of a smaller number of Rho GEFs, SGEF also possesses a single SH3 domain that is located at the C-terminal end of the protein (aa 789850). Three other functional domains were also identified. Like PDZ-RhoGEF (10), SGEF contains an N-terminal proline-rich region (aa 106173). Two bipartite nuclear localization signals situated at the N terminus (aa 2037, RRSIPQPHQLLGRSKPRP) and immediately N-terminal to the DH domain (aa 425442, KRKGLSQTVSQEERKRQE) were identified in SGEF.
The longest open reading frame of the CSGEF cDNA is derived from exons 1215, and it is preceded by a single upstream translation termination codon that is encoded by intron 10 sequences (Fig. 3
). The different exon content of CSGEF does not alter the reading frame of the coding sequence, except that the predicted first methionine of CSGEF corresponds to methionine 733 of SGEF. In contrast to SGEF, the longest open reading frame of CSGEF is only 139 codons long, and the predicted polypeptide lacks many of the features found in SGEF, hence the name CSGEF (C-terminal SGEF). CSGEF contains the last 50 aa of the PH domain and the complete SH3 domain.
The calculated molecular masses of SGEF and CSGEF are 97 and 15 kDa, respectively. To estimate the molecular masses of SGEF and CSGEF, the proteins were transiently expressed in human cells as fusion proteins with C-terminal HA epitopes (Fig. 4
). HA-tagged CSGEF migrated at an apparent molecular mass of approximately 17 kDa, which is consistent with the calculated weight of CSGEF and the presence of 15 heterologous residues (SRGPYPYDVPDYASL) at its C terminus. Although multiple HA-tagged SGEF polypeptides were detected, the size of the largest polypeptide (100 kDa) was in agreement with the molecular mass of SGEF-HA. The shorter polypeptides, ranging from 3364 kDa in size, were attributed to internal initiation of translation at methionines located approximately between aa 281 and 571.
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To more precisely define the time course of CSGEF mRNA up-regulation, LNCaP cells were exposed to 0.1 nM R1881 and harvested 172 h later. CSGEF mRNA levels were determined by ribonuclease protection assay using the AL cRNA probe (although this probe also detects SGEF, the low levels of SGEF mRNA were not expected to interfere with the assay). A modest (
2-fold compared with baseline), but reproducible, increase in CSGEF mRNA levels was detected as early as 3 h after the addition of R1881 to the culture medium (Fig. 5B
). CSGEF mRNA levels increased steadily over time and peaked at 2448 h after the addition of R1881.
The kinetics of R1881-induced CSGEF mRNA up-regulation were similar to those of NKX3.1, a gene whose expression is directly regulated by androgen receptor at the transcriptional level (11). We therefore examined the effect of RNA and protein synthesis inhibitors on R1881-induced up-regulation of CSGEF mRNA levels to determine whether CSGEF up-regulation occurs at the transcriptional level and whether protein synthesis is required. LNCaP cells were treated with R1881 (0.1 nM) in combination with the protein synthesis inhibitor cycloheximide (10 µg/ml), the RNA synthesis inhibitor actinomycin D (1 µg/ml), or the androgen receptor antagonist Casodex (3 x 10-6 M). CSGEF mRNA levels were determined by ribonuclease protection assay using the AL cRNA probe. R1881 alone caused a 4.2-fold increase in CSGEF mRNA levels (Fig. 5C
). The effect of R1881 was completely blocked by actinomycin D, but not by cycloheximide, indicating that the effect of R1881 is transcriptional and does not require protein synthesis. Predictably, Casodex also blocked the effect of R1881, thereby confirming that R1881-induced up-regulation of CSGEF is mediated by the androgen receptor.
SGEF is expressed ubiquitously, whereas CSGEF expression is restricted to prostate and liver
Northern blot analyses were performed to determine the tissue expression profile and size of SGEF transcripts. We used the B45 cDNA fragment as probe because we anticipated that it would detect both SGEF and CSGEF transcripts, as explained previously. We first performed a qualitative analysis of SGEF mRNA levels in total RNA samples prepared from control and androgen-treated LNCaP cells. A major 3.5-kb transcript was detected in control cells, and the abundance of this transcript increased markedly after a 24-h exposure to 0.1 nM R1881 (Fig. 6A
). The size of the most abundant mRNA is consistent with that of the CSGEF cDNA (3.1 kb). An approximately 4.4-kb transcript of lesser abundance was also detected in R1881-treated LNCaP cells. We believe that this transcript could result from the use of an alternate polyadenylation site. In agreement with the results of the ribonuclease protection experiments, we did not detect longer (>5 kb) transcripts that could correspond to SGEF in LNCaP total RNA.
To determine the expression profile of SGEF and CSGEF mRNAs in human tissues, we performed Northern blot analyses of multiple tissue blots (CLONTECH Laboratories, Inc.) containing samples of polyadenylated RNA from 16 different human tissues (Fig. 6B
). The B45 probe detected an approximately 6-kb transcript that we believe to be SGEF in tissues of the digestive system (liver, pancreas, small intestine, and colon), cardiovascular system (lung and heart), as well as brain, kidney, and tissues of the reproductive system (testis, placenta, and possibly uterus), including prostate. SGEF mRNA was not detected in skeletal muscle or tissues of the immune or hemopoietic systems (spleen, thymus, and peripheral blood leukocytes). In contrast to the widely expressed SGEF, CSGEF mRNA was only detected in prostate, where it constitutes the major SGEF-derived transcript, and in liver. Interestingly, liver contained an abundance of SGEF-derived (and/or SGEF-related) transcripts that ranged from approximately 1.46.0 kb in size. These transcripts were so abundant that CSGEF mRNA was clearly visible only after shorter exposures than the one presented in Fig. 6B
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The fact that CSGEF mRNA is expressed in androgen-sensitive human prostate and LNCaP cells prompted us to examine CSGEF expression in a series of human prostate and breast cancer cell lines that display different biological responses to androgens. Northern blot analysis using the B45 cDNA probe revealed that CSGEF is expressed at very high levels in androgen-responsive LNCaP cells compared with the androgen-insensitive DU 145 and PC-3 cells in which CSGEF mRNA was not detected (Fig. 6C
). Appreciable amounts of CSGEF mRNA were not detected in any of the human breast cancer cell lines by Northern blot analysis. However, a faint band that could correspond to SGEF mRNA was observed in several cell lines, particularly in breast BT-474 and prostate DU 145 cells. To verify the presence of SGEF in these cells we performed ribonuclease protection assays using the AK cRNA probe specific for SGEF. These experiments confirmed that SGEF is expressed, albeit at low levels, in all of the cell lines examined (Fig. 6D
). To determine whether any of these cell lines (besides LNCaP) expresses CSGEF, we performed ribonuclease protection assays using the AL cRNA probe that recognizes sequences common to SGEF and CSGEF mRNAs (Fig. 6E
). We expected that cell lines that express CSGEF would display a stronger hybridization signal with the AL probe than with the AK probe. Except for LNCaP cells, which produced the expected pattern, none of the other cell lines, with the possible exception of BT-20 cells, was found to express CSGEF mRNA.
| Discussion |
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The human SGEF gene is localized on chromosome 3q25.2, a portion of chromosome 3 (3q25-q26.2) that has been identified by comparative genomic hybridization as an amplification unit in prostate tumors (13). Based on our analysis of SGEF/CSGEF mRNA levels in a limited number of cell lines, we could not confirm that SGEF mRNA is overexpressed in prostate cancer. In fact, SGEF mRNA levels were present at low levels in both breast and prostate cancer cell lines. In contrast, CSGEF mRNA levels were much higher in LNCaP cells compared with the other cell lines, in which CSGEF mRNA was not detectable by Northern blot analysis. We presume that the high level expression of CSGEF mRNA in LNCaP cells is not due to gene amplification, because a recent study that employed comparative genomic hybridization did not detect amplification of chromosome 3 in LNCaP cells (14).
The structure of the SGEF gene proposed herein is consistent with the sequences of the most informative cDNAs that have been isolated to date, namely SGEF, CSGEF, AK022884/FLJ12822, and AL117429. Two other cDNAs that have not been discussed in detail, AK022655 and BC016628, are also consistent with the gene structure, because they are included in SGEF, except that AK022655 lacks a portion of exon 15 (see Fig. 3
). This particularity of AK022655 cannot be explained at present. However, the existence of other alternatively spliced transcripts of SGEF cannot be excluded.
SGEF was so named because it contains a DH domain in tandem with a PH domain, which are characteristic of GEFs for the Rho subfamily of guanine nucleotide-binding proteins. The prefix S was added because SGEF contains a C-terminal SH3 binding domain. SGEF is a full-length cDNA that encompasses a previously cloned partial cDNA designated FLJ12822 (GenBank accession no. AK022884). FLJ12822 contains the last 408 codons of the SGEF open reading frame, which correspond to part of the DH domain and the complete PH and SH3 domains. We submitted the sequence of the SGEF cDNA to GenBank in November 2001, and it has since been included in a recently published comprehensive review of Rho GEFs (3). Based on this review, SGEF has been assigned to a subgroup of Rho GEFs that includes ephexin (15), TIM/Arhgef5 (16), KIAA0915/Arhgef15 (17), and NBR/Arhgef16 (GenBank accession no. D89016/BC002681/NM_014448), a Rho GEF thought to be a potential candidate gene for human neuroblastoma.
An interesting feature of SGEF is the presence of an N-terminal proline-rich domain that could be involved in protein-protein interactions, especially of the intramolecular type, that are believed to inhibit Rho GEF activity (5). In fact, it is possible that SGEF could be maintained in an inactive form as a result of interactions between its N-terminal proline-rich region and its C-terminal SH3 domain (18). SGEF also contains two putative nuclear localization signals, which suggests that it could be translocated to the nucleus in response to certain stimuli. This possibility is supported by the fact that Vav1, another Rho GEF, is translocated to the nucleus of T cells in response to PRL (19).
The biological properties of SGEF remain to be tested. For instance, we have yet to analyze the ability of SGEF to catalyze guanine nucleotide exchange on Rho GTPases. However, it is highly likely that SGEF possesses such catalytic activity, because it is structurally related to ephexin, which is known to catalyze guanine nucleotide exchange on Rho, Rac, and Cdc42 (15). To our knowledge, the catalytic activities of NBR/Arhgef16, KIAA0915/Arhgef15, and TIM/Arhgef5 have not been demonstrated. It will also be of interest to determine whether SGEF, like most other Rho GEFs, possesses transforming activity.
Another interesting function that will require testing is the possible role of SGEF in steroid hormone, particularly androgen, receptor action. For example, the Brx protein, another DH and PH domain-containing protein, was found to interact with the estrogen receptor and potentiate its transcriptional activity (20). Moreover, the recent discovery that the androgen receptor coactivator FHL2 is translocated to the nucleus after activation of the Rho signaling pathway may represent another possible mechanism by which androgen regulation of Rho GEF activity could be implicated in transcriptional regulation by androgen receptor (21).
SGEF mRNA was detected in several human tissues of many different physiological systems (nervous, reproductive, digestive, etc.), which suggests that the SGEF protein could be involved in the activation of Rho GTPases in response to various stimuli. On the other hand, CSGEF mRNA expression is restricted to the prostate and liver, which suggests that CSGEF may play a much more specialized role in the control of Rho GTPase activity. Because CSGEF lacks the functional domains that are responsible for the biological activity of Rho GEFs, we hypothesize that CSGEF could act as a modulator of the activity of other Rho GEFs or even of SGEF itself.
In one of several possible models, CSGEF protein produced in response to androgen would be targeted to the appropriate subcellular location by its partial PH domain, thereby allowing its SH3 domain to interact with compatible functional domains of other proteins, including the proline-rich domain of SGEF. The consequences of such interactions remain speculative, but in theory an interaction between CSGEF and SGEF could result in the activation of SGEF. CSGEF could also act as a dominant negative regulator of the activity of SGEF or of other Rho GEFs. Dominant negative proteins are naturally occurring, physiologically important regulators that have been identified in several different signaling pathways. A recently identified dominant negative protein that is conceptually analogous to CSGEF is
NSTAT92E (22). Like CSGEF,
NSTAT92E lacks the N-terminal portion of the corresponding full-length protein (STAT92E), and it arises from a different promoter of the stat92e locus.
The up-regulation of CSGEF mRNA levels by androgen in LNCaP cells is relatively rapid and occurs at the transcriptional level, as it is abrogated by an RNA synthesis inhibitor, but not by an inhibitor of protein synthesis. One would therefore expect the androgen receptor to interact, directly or via associated transcription factors, with the regulatory elements of the SGEF gene that control CSGEF expression. Intron 10 contains a putative TATA box (TATAAA) approximately 40 bp upstream of the 5' end of the CSGEF cDNA as well as several half-sites of sequences TGTTCT, AGTGCT, GGAACA, GGAACA, AGTGCT, AGAACA, and GGTACA that partially match the consensus sequence of the androgen response element, 5'-GGA/TACANNNTGTTCT-3' (23). A more detailed analysis of the SGEF gene will be required to define the regulatory elements that are involved in androgen-induced up-regulation of CSGEF.
In summary, we have identified a new DH-PH domain-containing protein termed SGEF that is likely to regulate Rho GTPase activity in a wide variety of human cell types. An interesting characteristic of SGEF is that it encodes an N-terminal truncated form of SGEF, CSGEF, whose expression is induced by androgens in LNCaP human prostate cancer cells. CSGEF may constitute a link between the androgen receptor and Rho GTPase signaling pathways in prostate cells. Future experiments will determine the specific role of SGEF/CSGEF in androgen-induced physiological changes in the prostate and prostate cancer cell proliferation.
| Acknowledgments |
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| Footnotes |
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Abbreviations: aa, Amino acids; CMV, cytomegalovirus; CSGEF, C-terminal Src homology 3 domain-containing guanine nucleotide exchange factor; DH, Dbl homology; GEF, guanine nucleotide exchange factor; GTPase, guanosine triphosphatase; HA, hemagglutinin; PH, pleckstrin homology; SGEF, Src homology 3 domain-containing guanine nucleotide exchange factor; SH3, Src homology 3.
Received September 19, 2002.
Accepted for publication January 9, 2003.
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